一、基本信息：
张志燕，动物遗传育种与繁殖专业，博士，研究员，入选农业科研杰出人才培养计划。主要从事家猪育种及应用相关的研究，在家猪表型组快速精准测定和高效精准猪基因组选择育种技术等方向有较突出的优势。作为主要骨干，培育了“山下长黑”猪新品种，创制了具有国际领先水平的家猪基因育种芯片“中芯1号”，并建立了高效精准基因组选择育种技术方案，在全国生猪主产省份推广检测30余万种个体，2021年入选江西省十大科技成果。
二、科研项目概况：主持国家自然科学基金、国基重点研发计划子课题等国家级科学基金项目7项；以第一或通讯作者（含共同）在Nature communication, Science China-Life Science,等国际著名期刊上发表论文42篇；授权国家发明专利及软件著作6项。入选江西省青年井冈学者，主持的“猪多肋性状的因果基因鉴别及产业化应用 ”项目获江西省科技进步一等奖。
三、教育经历
2008/11–2013/11，University of Liege，数量遗传学，博士，导师：黄路生 & Michel Georges
2005/9–2008/7，江西农业大学，动物遗传育种与繁殖，硕士,导师：黄路生
2001/9–2005/7，西北农林科技大学,生物技术，学士
四、工作经历
2022/12-至今，江西农业大学，猪遗传改良与种质创新全国重点实验室，研究员
2016/10-2022/12，江西农业大学，猪遗传改良与养殖技术省部共建国家重点实验室，副研究员
2012/1-2016/10，江西农业大学，猪遗传改良与养殖技术省部共建共建重点实验室，助理研究员
2008/7-2011/12，江西农业大学，猪遗传改良与养殖技术省部共建共建重点实验室，研究实习员
五、代表性研究成果（第一/通讯作者）
(1)Zhang, Z. Y.#; Ren, J.#; Ren, D. R.; Ma, J. W.; Guo, Y. M.; Huang, L. S.*; Mapping quantitative trait loci for feed consumption and feeding behaviors in a White Duroc x Chinese Erhualian resource population, Journal of Animal Science, 2009, 87(11): 3458-63. (期刊论文)
(2)Z. Zhang; T. Druet*; Marker imputation with low-density marker panels in Dutch Holstein cattle, J Dairy Sci, 2010, 93(11): 5487-94. (期刊论文)
(3)Z. Zhang; F. Guillaume; A. Sartelet; C. Charlier; M. Georges; F. Farnir*; T. Druet*; Ancestral haplotype-based association mapping with generalized linear mixed models accounting for stratification, Bioinformatics, 2012, 10(1093): 1-7. (期刊论文)
(4)Zhang, Zhiyan; Hong, Yuan; Gao, Jun; Xiao, Shijun; Ma, Junwu; Zhang, Wanchang; Ren, Jun*; Huang, Lusheng*; Genome-Wide Association Study Reveals Constant and Specific Loci for Hematological Traits at Three Time Stages in a White Duroc x Erhualian F-2 Resource Population, PLos One, 2013, 8(5): e63665. (期刊论文)
(5)Zhang, Feng#; Zhang, Zhiyan#; Yan, Xueming; Chen, Hao; Zhang, Wanchang; Hong, Yuan; Huang, Lusheng*; Genome-wide association studies for hematological traits in Chinese Sutai pigs, BMC Genetics, 2014, 15: 41. (期刊论文)
(6)F. Zhang#; Z. Zhang#*; Y. He; H. Chen; B. Yang; W. Deng; L. Huang*; RegionPlot: an r package for regional plot association results for pigs, Animal Genetics, 2014, 46(1): 94-95. (期刊论文)
(7)Yuna He#; Junwu Ma#; Feng Zhang; Lijuan Hou; Hao Chen; Yuanmei Guo*; Zhiyan Zhang*; Multi-breed genome-wide association study reveals heterogeneous loci associated with loin eye area in pigs, Journal of Applied Genetics, 2016, 57(511): 1-8. (期刊论文)
(8)Zhao Xueyan#; Zhao Kewei#; Ren Jun; Zhang Feng; Jiang Chao; Hong Yuan; Jiang Kai; Yang Qiang; Wang Chengbin; Ding Nengshui; Huang Lusheng; Zhang Zhiyan*; Xing Yuyun*; An imputation‐based genome‐wide association study on traits related to male reproduction in a White Duroc× Erhualian F2 population, Animal Science Journal, 2015, 12(468): 1-10. (期刊论文)
(9)He, Yuna#; Li, Xinjian#; Zhang, Feng; Su, Ying; Hou, Lijuan; Chen, Hao; Zhang, Zhiyan*; Huang, Lusheng*; Multi-breed genome-wide association study reveals novel loci associated with the weight of internal organs., Genet Sel Evol, 2015, 47: 87-87. (期刊论文)
(10)Wenshui Xin#; Xinjian Li#; Feng Zhang; Guorong Yan; Nengshui Ding; Lusheng Huang*; Zhiyan Zhang*; A multi-population survey on swine feeding behavior with electronic feeding devices, Archives of Animal Breeding, 2016, 59(1): 445-452. (期刊论文)
(11)wenshui Xin#; Feng Zhang#; Guorong Yan; Wenwu Xu; Shijun Xiao; Zhiyan Zhang*; Lusheng Huang*; A whole genome sequence association study for puberty in a large Duroc×Erhualian F2 population, Animal Genetics, 2017, 20(10): 1-7. (期刊论文)
(12)Yan Guorong; Qiao Ruimin; Zhang Feng; Xin Wenshui; Xiao Shijun; Huang Tao; Zhang Zhiyan*; Huang Lusheng; Imputation-Based Whole-Genome Sequence Association Study Rediscovered the Missing QTL for Lumbar Number in Sutai Pigs, Scientific Reports, 2017, 7(1): 615. (期刊论文)
(13)Xin W S; Zhang F; Yan G R; Xu W W; Xiao S J; Zhang Z Y; Huang L S; A whole genome sequence association study for puberty in a large DurocxErhualian F2 population, Animal Genetics, 2018, 49(1): 29-35. (期刊论文)
(14)Guorong Yan; Tianfu Guo; Shijun Xiao; Feng Zhang; Wenshui Xin; Tao Huang; Yiping Li; Wenwu Xu; Zhiyan Zhang*; Lusheng Huang*; Imputation-Based Whole-Genome Sequence Association Study Reveals Constant and Novel Loci for Hematological Traits in a Large-Scale Swine F2 Resource Population, Frontiers in Genetics, 2018, 9(401): 1-12. (期刊论文)
(15)Ji, Jiuxiu; Yan, Guorong; Chen, Dong; Xiao, Shijun; Gao, Jun*; Zhang, Zhiyan*; An association study using imputed whole-genome sequence data identifies novel significant loci for growth-related traits in a Duroc x Erhualian F-2 population, Journal of Animal Breeding and Genetics, 2019, 136(3): 217-228. (期刊论文)
(16)Xu, Wenwu; Chen, Dong; Yan, Guorong; Xiao, Shijun; Huang, Tao; Zhang, Zhiyan*; Huang, Lusheng*; Rediscover and Refine QTLs for Pig Scrotal Hernia by Increasing a Specially Designed F-3 Population and Using Whole-Genome Sequence Imputation Technology, Frontiers in Genetics, 2019, 10: 890. (期刊论文)
(17)Guo, Tianfu; Gao, Jun; Yang, Bin; Yan, Guorong; Xiao, Shijun; Zhang, Zhiyan; Huang, Lusheng; A whole genome sequence association study of muscle fiber traits in a White DurocxErhualian F-2 resource population, Asian-Australasian Journal of Animal Sciences, 2020, 33(5): 704-711. (期刊论文)
(18)Zheng, Min#; Xiao, Shijun#; Guo, Tianfu; Rao, Lin; Li, Longyun; Zhang, Zhiyan*; Huang, Lusheng*; DNA methylomic homogeneity and heterogeneity in muscles and testes throughout pig adulthood, Aging, 2020, 12(1-10). (期刊论文)
(19)Xie, Lei; Qin, Jiangtao; Rao, Lin; Tang, Xi; Cui,Dengshuai; Chen Liqing; Xu, Wenwu; Xiao, Shijun*; Zhang,zhiyan*; Huang, Lusheng; Accurate prediction and genome﹚ide association analysis of digital intramuscular fat content in longissimus muscle of pigs, Animal Genetics, 2021. (期刊论文)
(20)Chen, Dong; Xin, Wenshui; Yao, Tianxiong; Rao, Lin; Xu, Shiqian; Xiao, Shijun*; Zhang, Zhiyan*; Multi-breed investigation of pig social rank and biological rhythm based on feeding behaviors at electronic feeding stations, Livestock Science, 2021, 245(2021): 104419. (期刊论文)
(21)Yan,Guorong#; Liu,Xianxian#; Xiao,Shijun; Xin,Wenshui; Xu,Wenwu; Li,Yiping; Huang,Tao; Qin,Jiangtao; Xie,Lei; Ma,Junwu*; Zhang,zhiyan*; Huang,Lusheng; An imputed whole-genome sequence-based GWAS approach pinpoints causal mutations for complex traits in a specific swine population, Science China Life Sciences, 2021, 10(1). (期刊论文)
(22)Xu,Wenwu; Liu,Xiaodong; Liao,Mingfu; Xiao,Shijun; Zheng,Min; Yao,Tianxiong; Chen,Zuoqian; Huang,Lusheng; Zhang,Zhiyan*; FMixFN: A Fast and big data-oriented genomic selection model based on iterative conditional expectation algorithm, Frontiers in Genetics, 2021, 12(1): 1-10. (期刊论文)
(23)Zheng, Min*; Guo, Tianfu; Yang, Bin; Zhang, Zhiyan*; Huang, Lusheng*; Origin, evolution, and tissue-specific functions of the porcine repetitive element 1, Genetics Selection Evolution, 2022, 54(1): 54. (期刊论文)
(24)Tang, Xi; Xie, Lei; Liu, Siyi; Chen, Zuoquan; Rao, Lin; Chen, Liqing; Li, Longyun; Xiao, Shijun; Zhang, Zhiyan*; Huang, Lusheng; Extensive evaluation of prediction performance for 15 pork quality traits using large scale VIS/NIRS data, Meat Science, 2022, 192: 108902. (期刊论文)
(25)Chen, Zuoquan; Xie, Lei; Tang, Xi; Zhang, Zhiyan*; NanoCross: A pipeline that detecting recombinant crossover using ONT sequencing data, Genomics, 2022, 114(6): 110499. (期刊论文)
(26)Tang, Xi; Rao, Lin; Xie, Lei; Yan, Min; Chen, Zuoquan; Liu, Siyi; Chen, Liqing; Xiao, Shijun; Ding, Nengshui; Zhang, Zhiyan*; Huang, Lusheng; Quantification and visualization of meat quality traits in pork using hyperspectral imaging, Meat Science, 2023, 196: 109052. (期刊论文)
(27)Liu, Siyi; Yao, Tianxiong; Chen, Dong; Xiao, Shijun; Chen, Liqing; Zhang, Zhiyan*; Genomic prediction in pigs using data from a commercial crossbred population: insights from the Duroc x (Landrace x Yorkshire) three-way crossbreeding system, Genetics Selection Evolution, 2023, 55(1): 21. (期刊论文)
(28)Xie, Lei; Qin, Jiang-tao; Rao, Lin; Cui, Deng-shuai; Tang, Xi; Xiao, Shi-jun*; Zhang, Zhi-yan*; Huang, Lu-sheng; Effects of carcass weight, sex and breed composition on meat cuts and carcass trait in finishing pigs, Journal of Integrative Agriculture, 2023, 22(5): 1489-1501. (期刊论文)
(29)Xie, Lei; Qin, Jiangtao; Yao, Tianxiong; Tang, Xi; Cui, Dengshuai; Chen, Liqing; Rao, Lin; Xiao, Shijun; Zhang, Zhiyan*; Huang, Lusheng; Genetic dissection of 26 meat cut, meat quality and carcass traits in four pig populations, Genetics Selection Evolution, 2023, 55(1): 43. (期刊论文)
(30)Tong, Xinkai; Chen, Dong; Hu, Jianchao; Lin, Shiyao; Ling, Ziqi; Ai, Huashui; Zhang, Zhiyan*; Huang, Lusheng*; Accurate haplotype construction and detection of selection signatures enabled by high quality pig genome sequences, Nature Communications, 2023, 14(1): 5126. (期刊论文)
(31)Xie, Lei; Qin, Jiangtao; Rao, Lin; Cui, Dengshuai; Tang, Xi; Chen, Liqing; Xiao, Shijun; Zhang, Zhiyan*; Huang, Lusheng*; Genetic dissection and genomic prediction for pork cuts and carcass morphology traits in pig, Journal of Animal Science and Biotechnology, 2023, 14(1): 116. (期刊论文)
(32)Tang X , Xiao H , Luo T ,et al. Tracking nutritional and quality changes in frozen pork: A 12-month study using 7 categories of meat parameters and VIS/NIR spectroscopy[J].Food Chemistry, 2025, 481.DOI:10.1016/j.foodchem.2025.144003.
(33)Li, C., Ge, M., Long, K.et al. Mechanism of parent-of-origin effects revealed by multi-omic data in euro-chinese hybrid pigs.，Nature Communications 16, 7542 (2025). https://doi.org/10.1038/s41467-025-62243-6
六、主持或参加科研项目及人才计划项目情况
1. 国家自然科学基金地区项目，猪胴体经济切块遗传参数估计及遗传机制解析，32160782，34万元，2022/01-2025，在研，主持
2. 国家自然科学基金地区项目，利用高覆盖度甲基化测序技术系统解析猪时序特异、品种特异、组织特异的甲基化基因，31760656，38万元，2018/01-2021/12，已结题，主持
3. 国家自然科学基金应急管理项目，全基因组重测序关联分析定位猪阴囊疝疾病易感位点，31640046，15万元，2017/01-2017/12，已结题，主持
4. 国家重点研发计划子课题，调控猪脂代谢基因转录的关键蛋白质机器的鉴定、功能解析及育种价值评估，20ADFDFD，199.5万元，2020-2025，在研，主持
5. 江西省重点研发专项，优质高效猪新品系培育，20232ACF01002，1000万元，2024-2026，在研，主持
江西省农业发展专项，“中芯一号”推广应用，600万元，2022-2026，在研，主持
